Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:11850883..11854568-chr2:11860179..11862646,3	MCF-7	breast:
2	chr2:11859887..11861729-chr2:11865073..11867523,2	K562	blood:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11890286	0.89[ASN][1000 genomes]
rs13418215	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13421506	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28584687	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55676775	0.89[ASN][1000 genomes]
rs56858654	0.89[ASN][1000 genomes]
rs57456819	0.89[ASN][1000 genomes]
rs58273936	0.89[ASN][1000 genomes]
rs59502453	0.89[ASN][1000 genomes]
rs59838011	0.89[ASN][1000 genomes]
rs61410870	0.89[ASN][1000 genomes]
rs61430487	0.89[ASN][1000 genomes]
rs6432234	0.89[ASN][1000 genomes]
rs73177496	0.89[ASN][1000 genomes]
rs73179361	0.89[ASN][1000 genomes]
rs73179363	0.89[ASN][1000 genomes]
rs73179396	0.89[ASN][1000 genomes]
rs73179398	0.89[ASN][1000 genomes]
rs7556803	0.89[ASN][1000 genomes]
rs7580386	0.89[ASN][1000 genomes]
rs7580501	0.89[ASN][1000 genomes]
rs7581186	0.89[ASN][1000 genomes]
rs7581192	0.89[ASN][1000 genomes]
rs7583977	0.89[ASN][1000 genomes]
rs7583991	0.89[ASN][1000 genomes]
rs7594198	0.89[ASN][1000 genomes]
rs7594406	0.89[ASN][1000 genomes]
rs7597552	0.89[ASN][1000 genomes]
rs7597790	0.89[ASN][1000 genomes]
rs7598255	0.89[ASN][1000 genomes]
rs7598525	0.89[ASN][1000 genomes]
rs7601181	0.89[ASN][1000 genomes]
rs7606137	0.89[ASN][1000 genomes]
rs7606378	0.89[ASN][1000 genomes]
rs7606724	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11858200-11862200	Weak transcription	Pancreas	Pancrea
2	chr2:11859600-11862200	Weak transcription	Liver	Liver
3	chr2:11860000-11861800	Enhancers	Hela-S3	cervix
4	chr2:11860000-11862400	Weak transcription	Brain Anterior Caudate	brain
5	chr2:11860200-11861800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr2:11860200-11862400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:11860600-11861800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:11861000-11864400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:11861200-11866200	Weak transcription	Right Atrium	heart

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