Variant report

Variant	rs6733569
Chromosome Location	chr2:86822447-86822448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86817719..86819365-chr2:86821480..86823766,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1015117	1.00[CEU][hapmap]
rs10180036	0.96[CEU][hapmap]
rs10184584	0.99[ASN][1000 genomes]
rs10184879	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10184985	0.83[ASN][1000 genomes]
rs10187753	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187880	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11127045	1.00[CEU][hapmap]
rs11127047	1.00[CHB][hapmap];0.89[JPT][hapmap];0.99[ASN][1000 genomes]
rs11689330	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12328637	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12613282	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12614447	1.00[CEU][hapmap]
rs12615285	1.00[CEU][hapmap]
rs12623509	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12714186	0.96[CEU][hapmap]
rs12714198	0.96[CEU][hapmap]
rs12987172	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12991654	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13015620	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13034615	1.00[CEU][hapmap]
rs1518807	1.00[CEU][hapmap]
rs2241803	0.96[CEU][hapmap]
rs2292887	0.96[CEU][hapmap]
rs2367546	0.83[ASN][1000 genomes]
rs308900	0.81[ASN][1000 genomes]
rs3201448	1.00[CEU][hapmap]
rs3755002	1.00[CEU][hapmap]
rs422240	0.81[CHB][hapmap]
rs4240204	0.81[EUR][1000 genomes]
rs4832042	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4832043	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4832297	1.00[CEU][hapmap]
rs4832300	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4832303	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832304	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62147239	0.81[EUR][1000 genomes]
rs6728211	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6738663	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6750226	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7568840	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs7587034	1.00[ASN][1000 genomes]
rs7601115	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9284788	1.00[CEU][hapmap]
rs958561	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6733569	VPS24	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86819000-86823400	Enhancers	Colon Smooth Muscle	Colon
2	chr2:86819400-86822600	Enhancers	Fetal Heart	heart
3	chr2:86819800-86831000	Weak transcription	Fetal Brain Female	brain
4	chr2:86820000-86830600	Weak transcription	Brain Anterior Caudate	brain
5	chr2:86820000-86830800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr2:86820200-86831000	Weak transcription	Fetal Brain Male	brain
7	chr2:86820200-86831000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:86820400-86828400	Weak transcription	Fetal Stomach	stomach
9	chr2:86820600-86831000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr2:86821200-86823000	Weak transcription	Psoas Muscle	Psoas
11	chr2:86822200-86824200	Enhancers	Rectal Smooth Muscle	rectum

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