Variant report
| Variant | rs6737397 |
|---|---|
| Chromosome Location | chr2:56155990-56155991 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:56152117..56154083-chr2:56155709..56157314,3 | K562 | blood: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-EFEMP1-4 | chr2:56155293-56158694 | ucscGeneNc_uc002rzl_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10167115 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10201208 | 0.85[EUR][1000 genomes] |
| rs10469935 | 0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10518794 | 0.92[GIH][hapmap];0.83[TSI][hapmap] |
| rs13401367 | 0.91[YRI][hapmap] |
| rs13429887 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs14282 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs28370328 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28371015 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55886642 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs56210563 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56268747 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6707184 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6718023 | 1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6736923 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6748550 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72811703 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72811704 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72811714 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72811719 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7562440 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531374 | chr2:55653723-56299784 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 2 | nsv519184 | chr2:56154316-56163904 | Enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv874161 | chr2:56154316-56203798 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
