Variant report
| Variant | rs6748550 |
|---|---|
| Chromosome Location | chr2:56158279-56158280 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-EFEMP1-4 | chr2:56158056-56158694 | NONHSAT070809 |
| 2 | lnc-EFEMP1-4 | chr2:56155293-56158694 | ucscGeneNc_uc002rzl_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10167115 | 0.90[EUR][1000 genomes] |
| rs10469935 | 0.90[EUR][1000 genomes] |
| rs13429887 | 0.85[EUR][1000 genomes] |
| rs14282 | 0.85[EUR][1000 genomes] |
| rs28370328 | 0.90[EUR][1000 genomes] |
| rs28371015 | 0.90[EUR][1000 genomes] |
| rs55886642 | 0.85[EUR][1000 genomes] |
| rs56210563 | 0.90[EUR][1000 genomes] |
| rs56268747 | 0.90[EUR][1000 genomes] |
| rs6707184 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6718023 | 0.88[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6736923 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6737397 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72811703 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72811704 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72811714 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72811719 | 0.85[EUR][1000 genomes] |
| rs7562440 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531374 | chr2:55653723-56299784 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 2 | nsv519184 | chr2:56154316-56163904 | Enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv874161 | chr2:56154316-56203798 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
