Variant report

Variant	rs6738688
Chromosome Location	chr2:191028298-191028299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12616677	0.96[ASN][1000 genomes]
rs12617378	0.96[ASN][1000 genomes]
rs12620739	0.94[ASN][1000 genomes]
rs12623140	0.96[ASN][1000 genomes]
rs12623861	0.94[ASN][1000 genomes]
rs17791613	0.96[ASN][1000 genomes]
rs17791643	0.96[ASN][1000 genomes]
rs57856620	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60947110	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6709775	0.93[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.91[JPT][hapmap];0.84[LWK][hapmap];0.94[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6747241	0.87[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap]
rs6750723	0.90[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs785257	0.92[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs785258	0.98[ASN][1000 genomes]
rs785259	0.92[CHB][hapmap];0.96[CHD][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs785262	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191024400-191042200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:191025400-191030000	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:191027200-191028800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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