Variant report

Variant	rs6747241
Chromosome Location	chr2:191023356-191023357
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12616677	0.99[ASN][1000 genomes]
rs12617378	0.99[ASN][1000 genomes]
rs12620739	0.97[ASN][1000 genomes]
rs12623140	0.99[ASN][1000 genomes]
rs12623861	0.97[ASN][1000 genomes]
rs17791613	0.99[ASN][1000 genomes]
rs17791643	0.99[ASN][1000 genomes]
rs57856620	0.80[EUR][1000 genomes]
rs60947110	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6709775	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738688	0.87[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6750723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs785257	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs785258	0.98[ASN][1000 genomes]
rs785259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs785262	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191015400-191023400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:191019200-191023400	Weak transcription	Psoas Muscle	Psoas
3	chr2:191021600-191024200	Enhancers	GM12878-XiMat	blood
4	chr2:191022800-191024000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr2:191022800-191024400	Enhancers	Brain Cingulate Gyrus	brain
6	chr2:191023000-191025200	Enhancers	Brain Substantia Nigra	brain
7	chr2:191023200-191023400	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr2:191023200-191026200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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