Variant report

Variant	rs67402173
Chromosome Location	chr14:38937979-38937980
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11157003	0.94[ASN][1000 genomes]
rs1168566	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12435069	0.85[ASN][1000 genomes]
rs12588539	0.88[ASN][1000 genomes]
rs17107987	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17107995	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1815594	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1815595	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1815596	0.88[ASN][1000 genomes]
rs2415478	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2899873	0.93[EUR][1000 genomes]
rs4390500	0.93[EUR][1000 genomes]
rs4570744	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4901908	0.82[ASN][1000 genomes]
rs60658845	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61486868	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6650500	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67146678	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67712964	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7157738	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7159353	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72683076	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72685131	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8017551	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020485	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs913734	0.89[EUR][1000 genomes]
rs913735	0.89[EUR][1000 genomes]
rs913736	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533235	chr14:38558180-39117391	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2754119	chr14:38825349-38988849	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1846932	chr14:38842788-38944821	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv510632	chr14:38868313-38939927	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv901655	chr14:38887881-39019800	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1055088	chr14:38906586-38940508	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv438261	chr14:38930054-38938273	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv1054875	chr14:38931540-38943366	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv1041332	chr14:38934056-38951014	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38937800-38944000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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