Variant report

Variant	rs6740226
Chromosome Location	chr2:183362529-183362530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10174383	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10175845	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10497605	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10931016	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12464556	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12466615	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12474760	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1594305	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1991596	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2115863	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72625269	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7606875	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9332425	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9789764	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183355000-183364800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:183361600-183364200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:183361600-183364200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:183361600-183364400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:183361600-183392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:183361800-183364200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:183362200-183364400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:183362200-183364400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:183362200-183364400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:183362200-183365800	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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