Variant report

Variant	rs7606875
Chromosome Location	chr2:183372346-183372347
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10174383	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10175845	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10497605	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10931016	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11678804	0.95[ASN][1000 genomes]
rs12464556	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12466615	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12474760	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12616179	0.80[ASN][1000 genomes]
rs12616229	0.80[ASN][1000 genomes]
rs12622605	0.80[ASN][1000 genomes]
rs12623018	0.80[ASN][1000 genomes]
rs12996626	0.82[ASN][1000 genomes]
rs13020976	0.91[ASN][1000 genomes]
rs1594305	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1991596	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2082134	0.95[ASN][1000 genomes]
rs2082136	0.95[ASN][1000 genomes]
rs2099185	0.82[ASN][1000 genomes]
rs2115863	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2887217	0.81[ASN][1000 genomes]
rs2887218	0.95[ASN][1000 genomes]
rs35182213	0.81[ASN][1000 genomes]
rs3754928	0.91[ASN][1000 genomes]
rs4480955	0.82[ASN][1000 genomes]
rs4629124	0.82[ASN][1000 genomes]
rs4666851	0.82[ASN][1000 genomes]
rs4666852	0.95[ASN][1000 genomes]
rs67259847	0.80[ASN][1000 genomes]
rs6740226	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6758298	0.82[ASN][1000 genomes]
rs72625269	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9332425	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9789764	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3460937	chr2:183370439-183372447	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3460938	chr2:183370439-183372447	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv821840	chr2:183370578-183372588	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183361600-183392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:183367800-183373800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:183368200-183372800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:183371800-183384600	Weak transcription	Brain Inferior Temporal Lobe	brain

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