Variant report

Variant	rs2887218
Chromosome Location	chr2:183376487-183376488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10174383	0.94[ASN][1000 genomes]
rs10175845	0.99[ASN][1000 genomes]
rs10497605	0.83[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs10931016	0.90[ASN][1000 genomes]
rs11678804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11883669	0.86[JPT][hapmap]
rs11884886	0.85[JPT][hapmap]
rs11892848	0.85[JPT][hapmap]
rs12464556	0.93[ASN][1000 genomes]
rs12466615	0.93[ASN][1000 genomes]
rs12474760	0.90[ASN][1000 genomes]
rs12623018	0.84[AFR][1000 genomes]
rs12996626	0.81[ASN][1000 genomes]
rs13020976	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1430145	0.85[JPT][hapmap]
rs1430150	0.90[JPT][hapmap]
rs1594305	0.83[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs17265294	0.90[JPT][hapmap]
rs1991596	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs2082134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2082136	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099185	0.83[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs2115863	0.94[ASN][1000 genomes]
rs2303890	0.85[JPT][hapmap]
rs2368297	0.86[JPT][hapmap]
rs2368298	0.86[JPT][hapmap]
rs2368299	0.85[JPT][hapmap]
rs2887208	0.90[JPT][hapmap]
rs2887217	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs35182213	0.80[ASN][1000 genomes]
rs3754928	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4480955	0.81[ASN][1000 genomes]
rs4629124	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4666587	0.85[JPT][hapmap]
rs4666846	0.86[JPT][hapmap]
rs4666851	0.82[ASN][1000 genomes]
rs4666852	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758298	0.82[ASN][1000 genomes]
rs72625269	0.89[ASN][1000 genomes]
rs7563753	0.84[JPT][hapmap]
rs7578703	0.86[JPT][hapmap]
rs7601804	0.85[JPT][hapmap]
rs7606875	0.95[ASN][1000 genomes]
rs9332425	0.84[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs9789764	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183361600-183392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:183371800-183384600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:183373800-183378200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:183374200-183376600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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