Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10174383	0.99[ASN][1000 genomes]
rs10175845	0.94[ASN][1000 genomes]
rs10497605	0.86[ASN][1000 genomes]
rs10931016	0.86[ASN][1000 genomes]
rs11678804	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12464556	0.97[ASN][1000 genomes]
rs12466615	0.96[ASN][1000 genomes]
rs12474760	0.86[ASN][1000 genomes]
rs13008937	0.81[ASN][1000 genomes]
rs13020976	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430150	0.81[ASN][1000 genomes]
rs1594305	0.86[ASN][1000 genomes]
rs1991596	0.94[ASN][1000 genomes]
rs2082134	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2082136	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2115863	0.99[ASN][1000 genomes]
rs2303890	0.81[ASN][1000 genomes]
rs2887208	0.80[ASN][1000 genomes]
rs2887218	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4666852	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55893866	0.81[ASN][1000 genomes]
rs72625269	0.85[ASN][1000 genomes]
rs7606875	0.91[ASN][1000 genomes]
rs9332425	0.86[ASN][1000 genomes]
rs9789764	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183361600-183392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:183384800-183388800	Active TSS	Brain Angular Gyrus	brain
3	chr2:183386800-183388600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:183387600-183390200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:183388000-183388600	Enhancers	Fetal Brain Male	brain
6	chr2:183388200-183388600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:183388200-183388600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:183388200-183388600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:183388200-183388600	Enhancers	Brain Germinal Matrix	brain
10	chr2:183388200-183388800	Enhancers	Primary hematopoietic stem cells	blood
11	chr2:183388200-183388800	Enhancers	Colon Smooth Muscle	Colon
12	chr2:183388200-183389000	Enhancers	Rectal Smooth Muscle	rectum
13	chr2:183388200-183389200	Enhancers	Brain Cingulate Gyrus	brain
14	chr2:183388200-183390600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr2:183388400-183389000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr2:183388400-183392200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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