Variant report

Variant	rs6740536
Chromosome Location	chr2:7330645-7330646
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:7326218..7327860-chr2:7329938..7331497,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1404841	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1404842	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1404843	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1404844	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1453131	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1474401	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1474402	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1474403	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1917680	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2352711	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4669147	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6711226	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6719090	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6744969	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6745122	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6755106	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7557233	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7582053	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7607300	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3341770	chr2:7327201-7331599	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7321400-7331600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:7329400-7330800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:7329400-7331800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:7329400-7332400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:7329600-7332000	Weak transcription	Fetal Kidney	kidney
6	chr2:7329800-7331400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:7330000-7331200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr2:7330200-7331400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:7330200-7332000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr2:7330400-7330800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:7330400-7331000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:7330400-7331200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr2:7330400-7331200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr2:7330400-7331200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr2:7330400-7331200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr2:7330400-7331400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:7330400-7332400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr2:7330400-7332400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:7330600-7330800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:7330600-7331000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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