Variant report

Variant	rs7582053
Chromosome Location	chr2:7328447-7328448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1404841	0.95[EUR][1000 genomes]
rs1404842	0.95[EUR][1000 genomes]
rs1404843	0.95[EUR][1000 genomes]
rs1404844	0.95[EUR][1000 genomes]
rs1453131	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1474401	0.95[EUR][1000 genomes]
rs1474402	0.95[EUR][1000 genomes]
rs1474403	0.95[EUR][1000 genomes]
rs1917680	0.95[EUR][1000 genomes]
rs2352711	0.95[EUR][1000 genomes]
rs4669147	0.95[EUR][1000 genomes]
rs6711226	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6719090	0.95[EUR][1000 genomes]
rs6740536	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6744969	0.95[EUR][1000 genomes]
rs6745122	0.95[EUR][1000 genomes]
rs6755106	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7557233	0.95[EUR][1000 genomes]
rs7607300	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3341770	chr2:7327201-7331599	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7321200-7329200	Weak transcription	Pancreas	Pancrea
2	chr2:7321400-7331600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:7327200-7330600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:7328200-7328600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr2:7328400-7328600	Enhancers	A549	lung
6	chr2:7328400-7328800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr2:7328400-7328800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:7328400-7328800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:7328400-7329000	Enhancers	Placenta	Placenta
10	chr2:7328400-7329400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:7328400-7329400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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