Variant report

Variant	rs6740845
Chromosome Location	chr2:55047659-55047660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55042975..55046110-chr2:55047288..55049985,3	K562	blood:
2	chr2:54956388..54959275-chr2:55046945..55049769,2	MCF-7	breast:
3	chr2:55043190..55047083-chr2:55047288..55051839,4	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17046386	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56063218	0.85[AFR][1000 genomes]
rs59015634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60310888	0.88[AFR][1000 genomes]
rs61346650	1.00[AMR][1000 genomes]
rs6712532	1.00[AMR][1000 genomes]
rs6723047	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73934833	1.00[AMR][1000 genomes]
rs73934839	0.83[AMR][1000 genomes]
rs73934840	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73935221	0.81[AFR][1000 genomes]
rs73935222	0.84[AFR][1000 genomes]
rs73935223	0.84[AFR][1000 genomes]
rs73935224	0.84[AFR][1000 genomes]
rs73935225	0.84[AFR][1000 genomes]
rs73935227	0.84[AFR][1000 genomes]
rs73935663	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73935665	1.00[AFR][1000 genomes]
rs73935667	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73935669	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73935670	0.89[AFR][1000 genomes]
rs73935672	0.88[AFR][1000 genomes]
rs73935673	0.92[AFR][1000 genomes]
rs73936455	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73936456	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73936460	0.83[AMR][1000 genomes]
rs73936464	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33638	chr2:54765256-55109455	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1005449	chr2:54938633-55129503	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1844727	chr2:54999712-55084583	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv870295	chr2:55008613-55065985	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv874152	chr2:55023600-55060479	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv874153	chr2:55042463-55073428	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55046400-55065600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr2:55047000-55048400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:55047200-55048400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:55047400-55048000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr2:55047400-55048000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr2:55047400-55048200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:55047400-55048200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:55047400-55048400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr2:55047600-55048000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr2:55047600-55048000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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