Variant report

Variant	rs73936460
Chromosome Location	chr2:55003200-55003201
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17046386	0.83[AMR][1000 genomes]
rs57539931	0.84[AFR][1000 genomes]
rs59015634	0.83[AMR][1000 genomes]
rs61346650	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6712532	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6740845	0.83[AMR][1000 genomes]
rs73934812	0.90[AFR][1000 genomes]
rs73934813	0.92[AFR][1000 genomes]
rs73934833	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73934839	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73934840	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73935663	1.00[AMR][1000 genomes]
rs73935667	0.83[AMR][1000 genomes]
rs73936455	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73936456	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73936458	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73936459	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73936464	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33638	chr2:54765256-55109455	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1005449	chr2:54938633-55129503	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1844855	chr2:54987215-55012202	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1844727	chr2:54999712-55084583	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55002600-55003400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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