Variant report

Variant	rs73934813
Chromosome Location	chr2:54970083-54970084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57539931	0.88[AFR][1000 genomes]
rs61346650	0.89[AFR][1000 genomes]
rs6712532	0.93[AFR][1000 genomes]
rs73934808	0.82[AFR][1000 genomes]
rs73934809	0.85[AFR][1000 genomes]
rs73934812	0.96[AFR][1000 genomes]
rs73934833	0.93[AFR][1000 genomes]
rs73934839	0.92[AFR][1000 genomes]
rs73934840	0.87[AFR][1000 genomes]
rs73936455	0.87[AFR][1000 genomes]
rs73936456	0.87[AFR][1000 genomes]
rs73936460	0.92[AFR][1000 genomes]
rs73936464	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33638	chr2:54765256-55109455	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv582024	chr2:54894649-54999712	Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1005449	chr2:54938633-55129503	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv582025	chr2:54960680-54973834	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54967200-54977200	Weak transcription	Pancreas	Pancrea
2	chr2:54969200-54971400	Enhancers	Fetal Kidney	kidney
3	chr2:54969400-54972800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:54969600-54975400	Weak transcription	HepG2	liver
5	chr2:54969800-54970200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:54969800-54970200	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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