Variant report

Variant	rs67409335
Chromosome Location	chr6:37470568-37470569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr6:37470480-37470926	GM12878	blood:	n/a	n/a
2	CUX1	chr6:37470402-37470777	GM12878	blood:	n/a	n/a
3	RCOR1	chr6:37470455-37470568	GM12878	blood:	n/a	n/a
4	EP300	chr6:37470486-37470953	GM12878	blood:	n/a	n/a
5	RELA	chr6:37470484-37471325	GM19099	blood:	n/a	n/a
6	EBF1	chr6:37470424-37470786	GM12878	blood:	n/a	n/a
7	EBF1	chr6:37470491-37471314	GM12878	blood:	n/a	chr6:37471126-37471135
8	TBP	chr6:37470458-37470895	GM12878	blood:	n/a	n/a
9	CHD2	chr6:37470513-37471056	GM12878	blood:	n/a	n/a
10	EBF1	chr6:37470413-37470916	GM12878	blood:	n/a	n/a
11	MXI1	chr6:37470471-37470855	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37470529..37472896-chr6:37481415..37484376,2	MCF-7	breast:
2	chr6:37467472..37470201-chr6:37470249..37474536,6	K562	blood:
3	chr6:37468899..37470600-chr6:37474825..37476362,2	K562	blood:
4	chr6:37470263..37472144-chr6:37484814..37487547,2	K562	blood:
5	chr6:37470444..37471961-chr6:37472743..37474694,2	K562	blood:
6	chr6:37465129..37468666-chr6:37470017..37474659,10	K562	blood:

No data

Variant related genes	Relation type
ENSG00000204110	TF binding region
CCDC167	TF binding region
ENSG00000204110	Chromatin interaction
ENSG00000198937	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16889848	0.81[EUR][1000 genomes]
rs55738600	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55939502	0.87[ASN][1000 genomes]
rs55979453	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56145403	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58351141	0.81[EUR][1000 genomes]
rs67844017	0.87[ASN][1000 genomes]
rs883373	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37468000-37471200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr6:37468000-37472200	Weak transcription	Fetal Kidney	kidney
3	chr6:37468000-37472800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:37468000-37472800	Enhancers	Fetal Brain Male	brain
5	chr6:37468000-37473600	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:37468000-37475800	Enhancers	Thymus	Thymus
7	chr6:37468000-37477200	Enhancers	Primary T cells fromperipheralblood	blood
8	chr6:37468000-37483600	Enhancers	Fetal Thymus	thymus
9	chr6:37468200-37470800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:37468200-37470800	Weak transcription	Colonic Mucosa	Colon
11	chr6:37468200-37470800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:37468200-37470800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:37468200-37470800	Weak transcription	Spleen	Spleen
14	chr6:37468200-37471000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:37468200-37471200	Weak transcription	Brain Germinal Matrix	brain
16	chr6:37468200-37471200	Enhancers	Dnd41	blood
17	chr6:37468200-37474200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr6:37468200-37476000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr6:37468400-37475000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:37468600-37473200	Enhancers	Primary hematopoietic stem cells	blood
21	chr6:37468800-37473600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:37469200-37473000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr6:37469400-37470600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr6:37469400-37471000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr6:37469400-37473200	Enhancers	Primary B cells from cord blood	blood
26	chr6:37469600-37472000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:37469600-37472200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
28	chr6:37469800-37470600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:37469800-37470600	Enhancers	K562	blood
30	chr6:37469800-37471400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr6:37469800-37471400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:37469800-37471800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr6:37469800-37472200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr6:37470000-37470600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:37470000-37471000	Enhancers	Duodenum Mucosa	Duodenum
36	chr6:37470200-37470600	Enhancers	Primary T cells from cord blood	blood
37	chr6:37470200-37470600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:37470200-37472200	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr6:37470400-37470600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:37470400-37470800	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr6:37470400-37471000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:37470400-37471000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
43	chr6:37470400-37471200	Enhancers	HepG2	liver
44	chr6:37470400-37471400	Flanking Active TSS	GM12878-XiMat	blood
45	chr6:37470400-37472000	Enhancers	Fetal Brain Female	brain
46	chr6:37470400-37472200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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