Variant report

Variant	rs58351141
Chromosome Location	chr6:37467334-37467335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37465289..37468195-chr6:37607347..37609837,2	K562	blood:
2	chr6:37465876..37467537-chr6:37659500..37661508,2	K562	blood:
3	chr6:37465742..37467547-chr6:37480030..37482187,2	MCF-7	breast:
4	chr6:37426593..37429585-chr6:37466350..37468977,2	K562	blood:
5	chr6:37214851..37217818-chr6:37465538..37467566,2	K562	blood:
6	chr22:41842482..41843232-chr6:37467104..37467657,2	HCT-116	colon:
7	chr6:37442615..37445754-chr6:37464908..37469103,3	K562	blood:
8	chr6:37465143..37467557-chr6:37524766..37526974,2	K562	blood:
9	chr6:37465889..37467468-chr6:37472296..37474310,2	K562	blood:
10	chr6:37278969..37281772-chr6:37464044..37467373,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137200	Chromatin interaction
ENSG00000112139	Chromatin interaction
ENSG00000183864	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12529271	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16889848	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17572459	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28385585	0.89[AFR][1000 genomes]
rs55738600	0.86[AFR][1000 genomes]
rs55800130	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67409335	0.81[EUR][1000 genomes]
rs73427657	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs879482	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs914353	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37466000-37468200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:37466200-37467400	Flanking Active TSS	Dnd41	blood
3	chr6:37466600-37467400	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr6:37466600-37467400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:37466600-37467400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
6	chr6:37466600-37467400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:37466600-37467400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:37466600-37467400	Flanking Active TSS	Duodenum Mucosa	Duodenum
9	chr6:37466600-37467400	Flanking Active TSS	Fetal Thymus	thymus
10	chr6:37466600-37467400	Flanking Active TSS	K562	blood
11	chr6:37466600-37468000	Active TSS	Fetal Kidney	kidney
12	chr6:37466600-37468200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:37466600-37468200	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr6:37466600-37468200	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr6:37466600-37468200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr6:37466600-37468200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr6:37466600-37468200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:37466600-37468400	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr6:37466800-37467400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
20	chr6:37466800-37467400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:37466800-37467400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr6:37466800-37467400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:37466800-37467400	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr6:37466800-37467400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr6:37466800-37467400	Flanking Active TSS	Fetal Brain Male	brain
26	chr6:37466800-37467400	Flanking Active TSS	Fetal Stomach	stomach
27	chr6:37466800-37467400	Flanking Active TSS	HMEC	breast
28	chr6:37466800-37467400	Flanking Active TSS	NHEK	skin
29	chr6:37466800-37467600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr6:37466800-37467600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr6:37466800-37467600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
32	chr6:37466800-37467600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr6:37466800-37467600	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr6:37466800-37467600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr6:37466800-37467600	Flanking Active TSS	Osteobl	bone
36	chr6:37466800-37467800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:37466800-37468000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr6:37466800-37468000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:37466800-37468200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:37466800-37468200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:37466800-37468200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr6:37466800-37468200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:37466800-37468200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:37466800-37468200	Active TSS	HSMMtube	muscle
45	chr6:37467000-37467400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:37467000-37467400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:37467000-37467400	Flanking Active TSS	Primary B cells from peripheral blood	blood
48	chr6:37467000-37467400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:37467000-37467400	Flanking Active TSS	Liver	Liver
50	chr6:37467000-37467400	Flanking Active TSS	Fetal Muscle Leg	muscle

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