Variant report

Variant	rs55800130
Chromosome Location	chr6:37412538-37412539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37391738..37394075-chr6:37408772..37412559,3	K562	blood:
2	chr6:37405566..37410075-chr6:37411799..37416398,4	K562	blood:
3	chr6:37403638..37405474-chr6:37410855..37413567,2	K562	blood:
4	chr6:37407256..37408938-chr6:37410978..37413299,2	K562	blood:
5	chr6:37410272..37412594-chr6:37412669..37415128,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12529271	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1391345	0.88[ASN][1000 genomes]
rs16889848	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17572459	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55738600	0.81[EUR][1000 genomes]
rs55979453	0.83[EUR][1000 genomes]
rs58351141	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73427657	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs879482	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37401800-37414000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:37402200-37414000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:37402200-37417800	Weak transcription	Small Intestine	intestine
4	chr6:37402200-37427800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:37402400-37413600	Weak transcription	HMEC	breast
6	chr6:37403000-37434400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:37403200-37418400	Strong transcription	Fetal Stomach	stomach
8	chr6:37403200-37422000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:37403200-37423800	Strong transcription	Fetal Thymus	thymus
10	chr6:37403200-37432000	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:37403200-37432600	Strong transcription	Placenta	Placenta
12	chr6:37403200-37433200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:37403400-37422000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:37403400-37423800	Strong transcription	K562	blood
15	chr6:37403400-37432000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:37404000-37414200	Weak transcription	Fetal Brain Male	brain
17	chr6:37404800-37413800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:37404800-37413800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:37405000-37413400	Weak transcription	Colonic Mucosa	Colon
20	chr6:37405000-37414000	Weak transcription	Esophagus	oesophagus
21	chr6:37405000-37414400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:37405400-37413400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:37405800-37413800	Weak transcription	Brain Substantia Nigra	brain
24	chr6:37406000-37414000	Weak transcription	Gastric	stomach
25	chr6:37406200-37413400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:37406200-37414000	Weak transcription	Spleen	Spleen
27	chr6:37406600-37413600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:37406600-37413600	Weak transcription	Psoas Muscle	Psoas
29	chr6:37407800-37417000	Strong transcription	Fetal Brain Female	brain
30	chr6:37408600-37413800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:37408800-37433400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:37409000-37414000	Weak transcription	Pancreas	Pancrea
33	chr6:37409200-37426400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:37409600-37412800	Strong transcription	Fetal Kidney	kidney
35	chr6:37410000-37422200	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr6:37410400-37414000	Weak transcription	Right Ventricle	heart
37	chr6:37410400-37432400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:37410600-37413400	Weak transcription	NHEK	skin
39	chr6:37410600-37414000	Weak transcription	Lung	lung
40	chr6:37410600-37434200	Strong transcription	Primary T cells from cord blood	blood
41	chr6:37410800-37413400	Weak transcription	Ovary	ovary
42	chr6:37411200-37413600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr6:37411200-37414000	Weak transcription	Aorta	Aorta
44	chr6:37411200-37422000	Weak transcription	Right Atrium	heart
45	chr6:37411200-37428200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr6:37411200-37431400	Strong transcription	GM12878-XiMat	blood
47	chr6:37411200-37432800	Strong transcription	Primary B cells from cord blood	blood
48	chr6:37411200-37433200	Strong transcription	Fetal Intestine Small	intestine
49	chr6:37411400-37415000	Strong transcription	HSMM	muscle
50	chr6:37411400-37415400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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