Variant report

Variant	rs73427657
Chromosome Location	chr6:37404232-37404233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37388900..37391581-chr6:37403584..37406042,2	MCF-7	breast:
2	chr6:37403638..37405474-chr6:37410855..37413567,2	K562	blood:
3	chr6:37402051..37404356-chr6:37464049..37465588,2	K562	blood:
4	chr6:37403280..37405823-chr6:37419458..37421691,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12529271	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1391345	0.89[ASN][1000 genomes]
rs16889848	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17572459	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55738600	0.81[AFR][1000 genomes]
rs55800130	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55979453	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58351141	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs879482	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37401800-37404600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:37401800-37406000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:37401800-37414000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:37402200-37405400	Weak transcription	NH-A	brain
5	chr6:37402200-37405800	Weak transcription	Psoas Muscle	Psoas
6	chr6:37402200-37408000	Weak transcription	A549	lung
7	chr6:37402200-37408600	Weak transcription	Aorta	Aorta
8	chr6:37402200-37414000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:37402200-37417800	Weak transcription	Small Intestine	intestine
10	chr6:37402200-37427800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:37402400-37405400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:37402400-37405800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:37402400-37405800	Weak transcription	Stomach Mucosa	stomach
14	chr6:37402400-37406600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:37402400-37406600	Weak transcription	HUVEC	blood vessel
16	chr6:37402400-37408000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:37402400-37410200	Weak transcription	Right Atrium	heart
18	chr6:37402400-37411800	Weak transcription	Fetal Heart	heart
19	chr6:37402400-37413600	Weak transcription	HMEC	breast
20	chr6:37402800-37404600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr6:37402800-37411800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:37403000-37404400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
23	chr6:37403000-37409600	Strong transcription	Fetal Intestine Small	intestine
24	chr6:37403000-37434400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:37403200-37404800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
26	chr6:37403200-37404800	Strong transcription	Left Ventricle	heart
27	chr6:37403200-37405800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:37403200-37406200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:37403200-37406400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:37403200-37406600	Strong transcription	Fetal Lung	lung
31	chr6:37403200-37407200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr6:37403200-37407800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:37403200-37408200	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:37403200-37409000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:37403200-37409800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:37403200-37410000	Strong transcription	Fetal Muscle Trunk	muscle
37	chr6:37403200-37410200	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr6:37403200-37410800	Strong transcription	Primary B cells from cord blood	blood
39	chr6:37403200-37410800	Strong transcription	Fetal Muscle Leg	muscle
40	chr6:37403200-37418400	Strong transcription	Fetal Stomach	stomach
41	chr6:37403200-37422000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:37403200-37423800	Strong transcription	Fetal Thymus	thymus
43	chr6:37403200-37432000	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:37403200-37432600	Strong transcription	Placenta	Placenta
45	chr6:37403200-37433200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr6:37403400-37404600	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr6:37403400-37404600	Strong transcription	Gastric	stomach
48	chr6:37403400-37404800	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr6:37403400-37405000	Strong transcription	Rectal Smooth Muscle	rectum
50	chr6:37403400-37405600	Strong transcription	HSMM	muscle

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