Variant report

Variant	rs1391345
Chromosome Location	chr6:37398176-37398177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17572459	0.89[ASN][1000 genomes]
rs55800130	0.88[ASN][1000 genomes]
rs73427657	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807065	chr6:37379409-37399185	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37395200-37400000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:37395200-37400000	Weak transcription	HepG2	liver
3	chr6:37396200-37400200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:37398000-37399000	Weak transcription	K562	blood
5	chr6:37398000-37400200	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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