Variant report

Variant	rs67411922
Chromosome Location	chr15:75187612-75187613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:75187473-75194577	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr15:75187279-75194196	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:75131329..75142649-chr15:75180088..75200119,60	MCF-7	breast:
2	chr15:74911034..74913432-chr15:75186630..75189281,2	MCF-7	breast:
3	chr15:75133989..75136127-chr15:75187296..75189781,2	K562	blood:
4	chr15:75186057..75188212-chr15:75229416..75232067,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260824	TF binding region
MPI	TF binding region
ENSG00000179335	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000178741	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12906946	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12911781	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12914369	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4886633	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6495124	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6495126	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6495127	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495131	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7174968	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7495033	0.92[EUR][1000 genomes]
rs7497201	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8025890	0.81[AFR][1000 genomes]
rs8031937	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8042694	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv990390	chr15:75179300-75187945	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs67411922	ULK3	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75183200-75189400	Weak transcription	Psoas Muscle	Psoas
2	chr15:75183200-75191600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:75183200-75192000	Weak transcription	Fetal Kidney	kidney
4	chr15:75183200-75192400	Weak transcription	HUVEC	blood vessel
5	chr15:75183200-75197600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:75183400-75192200	Weak transcription	NH-A	brain
7	chr15:75183600-75193800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:75183600-75193800	Strong transcription	Fetal Stomach	stomach
9	chr15:75183800-75189200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:75184000-75195400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:75184200-75192400	Weak transcription	Fetal Brain Male	brain
12	chr15:75184200-75196600	Weak transcription	Small Intestine	intestine
13	chr15:75184800-75188400	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr15:75185000-75188400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr15:75185000-75193800	Strong transcription	Fetal Intestine Small	intestine
16	chr15:75185000-75194800	Weak transcription	Right Atrium	heart
17	chr15:75185200-75188600	Strong transcription	Fetal Muscle Leg	muscle
18	chr15:75185200-75193800	Strong transcription	Fetal Intestine Large	intestine
19	chr15:75185200-75197000	Weak transcription	Fetal Heart	heart
20	chr15:75185400-75188400	Strong transcription	Fetal Muscle Trunk	muscle
21	chr15:75185600-75188000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr15:75185800-75188200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr15:75185800-75188200	Weak transcription	HSMMtube	muscle
24	chr15:75185800-75190000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:75185800-75191200	Weak transcription	Aorta	Aorta
26	chr15:75185800-75192600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:75186000-75188000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr15:75186000-75188000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:75186000-75188000	Weak transcription	Brain Germinal Matrix	brain
30	chr15:75186000-75188000	Weak transcription	Fetal Brain Female	brain
31	chr15:75186000-75188200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr15:75186000-75188600	Weak transcription	Brain Angular Gyrus	brain
33	chr15:75186000-75188600	Weak transcription	Gastric	stomach
34	chr15:75186000-75189600	Weak transcription	Ovary	ovary
35	chr15:75186200-75187800	Weak transcription	Adipose Nuclei	Adipose
36	chr15:75186200-75187800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr15:75186200-75187800	Weak transcription	Fetal Thymus	thymus
38	chr15:75186200-75187800	Weak transcription	A549	lung
39	chr15:75186200-75188000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:75186200-75188000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr15:75186200-75188000	Weak transcription	Liver	Liver
42	chr15:75186200-75188000	Weak transcription	Brain Hippocampus Middle	brain
43	chr15:75186200-75188200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:75186200-75188200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:75186200-75188200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr15:75186200-75188200	Weak transcription	Brain Substantia Nigra	brain
47	chr15:75186200-75188200	Weak transcription	Colonic Mucosa	Colon
48	chr15:75186200-75188200	Weak transcription	Dnd41	blood
49	chr15:75186200-75188200	Weak transcription	HSMM	muscle
50	chr15:75186200-75188400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links