Variant report

Variant	rs67413432
Chromosome Location	chr18:24695331-24695332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16943293	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16943297	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16943302	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16943308	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16943314	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16943322	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4800276	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4800788	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55963048	0.90[EUR][1000 genomes]
rs56023263	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56044850	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56377830	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58873251	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61515494	0.97[EUR][1000 genomes]
rs66520490	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66678826	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67249853	0.95[AMR][1000 genomes]
rs67718506	0.95[AMR][1000 genomes]
rs67865858	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7237325	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72882371	0.97[EUR][1000 genomes]
rs72882373	0.97[EUR][1000 genomes]
rs72882384	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72882394	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72882398	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72882402	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72884315	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72884327	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72884328	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72884335	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72884338	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72884346	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72884359	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72884365	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72884366	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72884368	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72884369	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72884376	0.95[EUR][1000 genomes]
rs8093303	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9946228	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9957918	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv909475	chr18:24687324-24776226	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3410626	chr18:24694954-24698552	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24689200-24703600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:24693600-24707200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr18:24694200-24699400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr18:24695200-24699200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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