Variant report

Variant	rs67718506
Chromosome Location	chr18:24655872-24655873
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:24654215..24656527-chr18:24658995..24661475,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs16943293	0.84[AMR][1000 genomes]
rs16943297	0.84[AMR][1000 genomes]
rs16943302	0.97[AMR][1000 genomes]
rs16943308	0.97[AMR][1000 genomes]
rs16943314	0.84[AMR][1000 genomes]
rs16943322	0.97[AMR][1000 genomes]
rs4800276	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4800788	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56023263	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56044850	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56377830	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58321369	0.85[AFR][1000 genomes]
rs58873251	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61515494	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66520490	0.95[AMR][1000 genomes]
rs66678826	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs67249853	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67413432	0.95[AMR][1000 genomes]
rs67865858	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7237325	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72882371	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72882373	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72882384	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72882394	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72882398	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72882402	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72884315	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72884327	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72884328	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72884335	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72884338	0.84[AMR][1000 genomes]
rs72884346	0.97[AMR][1000 genomes]
rs72884359	0.84[AMR][1000 genomes]
rs72884365	0.84[AMR][1000 genomes]
rs72884366	0.81[AMR][1000 genomes]
rs72884368	0.81[AMR][1000 genomes]
rs72884369	0.97[AMR][1000 genomes]
rs72884376	0.84[AMR][1000 genomes]
rs73404839	0.83[AFR][1000 genomes]
rs765625	0.85[AFR][1000 genomes]
rs8093303	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9946228	0.95[AMR][1000 genomes]
rs9957918	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24645200-24656400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:24651200-24667600	Weak transcription	Pancreas	Pancrea
3	chr18:24652600-24657800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr18:24653200-24657000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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