Variant report

Variant	rs6744531
Chromosome Location	chr2:211394187-211394188
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56768350	1.00[AMR][1000 genomes]
rs60586565	1.00[AMR][1000 genomes]
rs6745175	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211384600-211394200	Weak transcription	Brain Angular Gyrus	brain
2	chr2:211391600-211396800	Weak transcription	Fetal Intestine Small	intestine
3	chr2:211392200-211394600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:211392400-211396000	Weak transcription	HepG2	liver
5	chr2:211392800-211394800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:211393000-211394800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr2:211393000-211397000	Weak transcription	Fetal Intestine Large	intestine
8	chr2:211393200-211394400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr2:211393600-211394600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:211393800-211395200	Weak transcription	Liver	Liver
11	chr2:211394000-211394200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr2:211394000-211394400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr2:211394000-211394600	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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