Variant report

Variant	rs56768350
Chromosome Location	chr2:211410175-211410176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10179039	1.00[EUR][1000 genomes]
rs10179212	1.00[EUR][1000 genomes]
rs16844589	1.00[EUR][1000 genomes]
rs2371010	1.00[EUR][1000 genomes]
rs60586565	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6732642	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6744531	1.00[AMR][1000 genomes]
rs6745175	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7598012	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211406000-211413800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:211406200-211413600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:211406200-211421000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:211406400-211411000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:211406400-211411600	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:211406600-211411400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:211406600-211411400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:211406600-211411400	Weak transcription	Brain Substantia Nigra	brain
9	chr2:211406600-211412800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr2:211406600-211413000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:211409600-211412400	Enhancers	Liver	Liver
12	chr2:211409800-211411800	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr2:211409800-211414000	Active TSS	Fetal Intestine Small	intestine
14	chr2:211409800-211415000	Active TSS	Fetal Intestine Large	intestine
15	chr2:211409800-211415400	Active TSS	Duodenum Mucosa	Duodenum
16	chr2:211410000-211410600	Weak transcription	HepG2	liver
17	chr2:211410000-211417000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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