Variant report

Variant	rs6732642
Chromosome Location	chr2:211421264-211421265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10179039	1.00[EUR][1000 genomes]
rs10179212	1.00[EUR][1000 genomes]
rs16844589	1.00[EUR][1000 genomes]
rs2371010	1.00[EUR][1000 genomes]
rs56768350	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60586565	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6745175	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7598012	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211412000-211422400	Weak transcription	Brain Hippocampus Middle	brain
2	chr2:211416800-211425800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:211418200-211424400	Genic enhancers	Fetal Intestine Large	intestine
4	chr2:211418600-211443200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:211419600-211423800	Enhancers	Fetal Intestine Small	intestine
6	chr2:211420400-211422000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:211421000-211423000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:211421000-211423600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:211421000-211423600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr2:211421200-211421600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr2:211421200-211423600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:211421200-211424600	Active TSS	Hela-S3	cervix
13	chr2:211421200-211425400	Active TSS	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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