Variant report

Variant	rs10179039
Chromosome Location	chr2:211538213-211538214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10179212	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10184727	1.00[AMR][1000 genomes]
rs10932347	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11903917	1.00[EUR][1000 genomes]
rs16844589	1.00[EUR][1000 genomes]
rs2371010	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56768350	1.00[EUR][1000 genomes]
rs60586565	1.00[EUR][1000 genomes]
rs6732642	1.00[EUR][1000 genomes]
rs6745175	1.00[EUR][1000 genomes]
rs73080189	1.00[EUR][1000 genomes]
rs73984631	1.00[AMR][1000 genomes]
rs73984634	1.00[AMR][1000 genomes]
rs7598012	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1013658	chr2:211447246-211809945	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv536135	chr2:211447246-211809945	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv536136	chr2:211497528-211830019	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv821631	chr2:211528918-211658981	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211501000-211540600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:211526400-211540400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:211527600-211538800	Weak transcription	Fetal Intestine Small	intestine
4	chr2:211528800-211542400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:211532000-211539000	Strong transcription	Hela-S3	cervix
6	chr2:211532000-211547000	Strong transcription	Liver	Liver
7	chr2:211532400-211547200	Strong transcription	Fetal Intestine Large	intestine
8	chr2:211533000-211547000	Strong transcription	Duodenum Mucosa	Duodenum
9	chr2:211537400-211538400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr2:211537400-211538400	Enhancers	HepG2	liver
11	chr2:211537600-211538400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:211537600-211538400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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