Variant report

Variant	rs16844589
Chromosome Location	chr2:211403522-211403523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10179039	1.00[EUR][1000 genomes]
rs10179212	1.00[EUR][1000 genomes]
rs2371010	1.00[EUR][1000 genomes]
rs56768350	1.00[EUR][1000 genomes]
rs60586565	1.00[EUR][1000 genomes]
rs6732642	1.00[EUR][1000 genomes]
rs6745175	1.00[EUR][1000 genomes]
rs7598012	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211396800-211404200	Enhancers	Fetal Intestine Small	intestine
2	chr2:211397000-211404400	Enhancers	Fetal Intestine Large	intestine
3	chr2:211398800-211404200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:211400200-211405600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:211400400-211405200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:211400400-211405400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:211400800-211404200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:211400800-211404400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:211400800-211405200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr2:211400800-211405400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr2:211401000-211405000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:211401800-211404400	Enhancers	Liver	Liver
13	chr2:211402400-211403600	Weak transcription	HepG2	liver
14	chr2:211402800-211403800	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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