Variant report

Variant	rs6745337
Chromosome Location	chr2:10336946-10336947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:10336932-10336994	K562	blood:	n/a	n/a
2	MXI1	chr2:10336188-10337272	SK-N-SH	brain:	n/a	chr2:10336563-10336578
3	NFIC	chr2:10336557-10337173	ECC-1	luminal epithelium:	n/a	chr2:10336875-10336891
4	POLR2A	chr2:10336393-10337236	K562	blood:	n/a	n/a
5	CTCF	chr2:10336244-10337283	SK-N-SH	brain:	n/a	chr2:10336797-10336810 chr2:10336576-10336589
6	POLR2A	chr2:10336916-10336972	HepG2	liver:	n/a	n/a
7	NFIC	chr2:10336543-10337140	ECC-1	luminal epithelium:	n/a	chr2:10336875-10336891
8	RAD21	chr2:10335946-10337232	SK-N-SH	brain:	n/a	chr2:10336789-10336802 chr2:10336890-10336904

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10335310..10337198-chr2:10565374..10566915,2	K562	blood:

Variant related genes	Relation type
MIR4261	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62127595	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7560636	0.82[ASN][1000 genomes]
rs887961	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873634	chr2:10275814-10337034	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
2	nsv873635	chr2:10286466-10344465	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv818977	chr2:10333767-10393038	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10290200-10351400	Strong transcription	Dnd41	blood
2	chr2:10302400-10337600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:10304400-10339800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:10311800-10337000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:10313000-10344400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:10314000-10340400	Weak transcription	HepG2	liver
7	chr2:10320600-10337200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:10321800-10338000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:10325600-10342800	Weak transcription	Fetal Brain Female	brain
10	chr2:10326600-10339400	Strong transcription	Thymus	Thymus
11	chr2:10329000-10337200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr2:10332000-10337400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr2:10333000-10347000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:10334200-10337000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr2:10335200-10338000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr2:10335200-10348600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr2:10335400-10337200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr2:10335800-10337200	Enhancers	Spleen	Spleen
19	chr2:10335800-10337400	Bivalent Enhancer	Fetal Stomach	stomach
20	chr2:10336000-10337200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr2:10336200-10337200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr2:10336200-10337200	Enhancers	Fetal Intestine Large	intestine
23	chr2:10336200-10337200	Enhancers	Fetal Muscle Leg	muscle
24	chr2:10336200-10337400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:10336200-10337400	Enhancers	Brain Substantia Nigra	brain
26	chr2:10336200-10337400	Enhancers	Fetal Lung	lung
27	chr2:10336400-10337000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr2:10336400-10337000	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr2:10336400-10337000	Enhancers	NH-A	brain
30	chr2:10336400-10337200	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr2:10336400-10337200	Enhancers	HSMMtube	muscle
32	chr2:10336400-10338000	Weak transcription	Fetal Intestine Small	intestine
33	chr2:10336400-10338600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr2:10336400-10338800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr2:10336600-10337000	Enhancers	Brain Germinal Matrix	brain
36	chr2:10336600-10337000	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr2:10336600-10337200	Bivalent Enhancer	Placenta	Placenta
38	chr2:10336600-10337200	Enhancers	Gastric	stomach
39	chr2:10336600-10337200	Enhancers	Stomach Mucosa	stomach
40	chr2:10336600-10337400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr2:10336600-10338200	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr2:10336800-10337000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
43	chr2:10336800-10337200	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr2:10336800-10337600	Enhancers	Fetal Brain Male	brain
45	chr2:10336800-10338200	Weak transcription	Fetal Thymus	thymus
46	chr2:10336800-10344600	Weak transcription	Brain Hippocampus Middle	brain

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