Variant report

Variant	rs887961
Chromosome Location	chr2:10337034-10337035
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr2:10336188-10337272	SK-N-SH	brain:	n/a	chr2:10336563-10336578
2	NFIC	chr2:10336557-10337173	ECC-1	luminal epithelium:	n/a	chr2:10336875-10336891
3	POLR2A	chr2:10336393-10337236	K562	blood:	n/a	n/a
4	CTCF	chr2:10336244-10337283	SK-N-SH	brain:	n/a	chr2:10336797-10336810 chr2:10336576-10336589
5	NFIC	chr2:10336543-10337140	ECC-1	luminal epithelium:	n/a	chr2:10336875-10336891
6	RAD21	chr2:10335946-10337232	SK-N-SH	brain:	n/a	chr2:10336789-10336802 chr2:10336890-10336904

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10335310..10337198-chr2:10565374..10566915,2	K562	blood:

Variant related genes	Relation type
MIR4261	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6745337	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873634	chr2:10275814-10337034	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
2	nsv873635	chr2:10286466-10344465	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv818977	chr2:10333767-10393038	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10290200-10351400	Strong transcription	Dnd41	blood
2	chr2:10302400-10337600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:10304400-10339800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:10313000-10344400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:10314000-10340400	Weak transcription	HepG2	liver
6	chr2:10320600-10337200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:10321800-10338000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:10325600-10342800	Weak transcription	Fetal Brain Female	brain
9	chr2:10326600-10339400	Strong transcription	Thymus	Thymus
10	chr2:10329000-10337200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:10332000-10337400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr2:10333000-10347000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr2:10335200-10338000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:10335200-10348600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr2:10335400-10337200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:10335800-10337200	Enhancers	Spleen	Spleen
17	chr2:10335800-10337400	Bivalent Enhancer	Fetal Stomach	stomach
18	chr2:10336000-10337200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr2:10336200-10337200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr2:10336200-10337200	Enhancers	Fetal Intestine Large	intestine
21	chr2:10336200-10337200	Enhancers	Fetal Muscle Leg	muscle
22	chr2:10336200-10337400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:10336200-10337400	Enhancers	Brain Substantia Nigra	brain
24	chr2:10336200-10337400	Enhancers	Fetal Lung	lung
25	chr2:10336400-10337200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr2:10336400-10337200	Enhancers	HSMMtube	muscle
27	chr2:10336400-10338000	Weak transcription	Fetal Intestine Small	intestine
28	chr2:10336400-10338600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr2:10336400-10338800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr2:10336600-10337200	Bivalent Enhancer	Placenta	Placenta
31	chr2:10336600-10337200	Enhancers	Gastric	stomach
32	chr2:10336600-10337200	Enhancers	Stomach Mucosa	stomach
33	chr2:10336600-10337400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:10336600-10338200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr2:10336800-10337200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr2:10336800-10337600	Enhancers	Fetal Brain Male	brain
37	chr2:10336800-10338200	Weak transcription	Fetal Thymus	thymus
38	chr2:10336800-10344600	Weak transcription	Brain Hippocampus Middle	brain

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