Variant report

Variant	rs6745533
Chromosome Location	chr2:185807024-185807025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10427295	0.85[YRI][hapmap]
rs10803979	0.89[YRI][hapmap]
rs10931156	0.81[CEU][hapmap]
rs10931157	0.83[ASN][1000 genomes]
rs10931158	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11899441	0.81[YRI][hapmap]
rs12476147	0.81[CEU][hapmap]
rs13025111	0.81[EUR][1000 genomes]
rs1366840	0.82[GIH][hapmap]
rs1366842	0.81[CEU][hapmap];0.95[GIH][hapmap];0.94[MEX][hapmap];0.81[EUR][1000 genomes]
rs17510170	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4667000	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs4667001	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs6722992	0.81[CEU][hapmap]
rs6726421	0.98[GIH][hapmap];0.90[MEX][hapmap];0.81[EUR][1000 genomes]
rs7571112	0.81[YRI][hapmap]
rs7603001	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6745533	PDE1A	cis	cerebellum	SCAN
rs6745533	CERKL	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185803800-185811800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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