Variant report

Variant	rs10427295
Chromosome Location	chr2:185796417-185796418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10803979	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11896205	0.81[AFR][1000 genomes]
rs11899441	0.96[YRI][hapmap]
rs11902795	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1599875	0.81[ASW][hapmap];0.89[LWK][hapmap]
rs16826204	1.00[EUR][1000 genomes]
rs60186429	1.00[EUR][1000 genomes]
rs6759569	1.00[EUR][1000 genomes]
rs72893092	0.97[AFR][1000 genomes]
rs72893100	0.94[AFR][1000 genomes]
rs7571112	0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7577657	0.81[ASW][hapmap];0.92[LWK][hapmap];0.83[MKK][hapmap]
rs7578837	1.00[EUR][1000 genomes]
rs7599314	0.81[ASW][hapmap];0.89[LWK][hapmap]
rs7603421	0.90[ASW][hapmap];0.92[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185792000-185805000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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