Variant report
| Variant | rs7577657 |
|---|---|
| Chromosome Location | chr2:185702594-185702595 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:185702239..185704050-chr2:185710526..185712364,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10427295 | 0.81[ASW][hapmap];0.92[LWK][hapmap];0.83[MKK][hapmap];1.00[EUR][1000 genomes] |
| rs10803979 | 1.00[EUR][1000 genomes] |
| rs10931153 | 0.96[YRI][hapmap] |
| rs11887199 | 1.00[YRI][hapmap] |
| rs11892202 | 1.00[YRI][hapmap] |
| rs11892276 | 1.00[YRI][hapmap] |
| rs11896874 | 1.00[YRI][hapmap] |
| rs11902536 | 1.00[YRI][hapmap] |
| rs11902795 | 1.00[EUR][1000 genomes] |
| rs1599875 | 1.00[ASW][hapmap];0.92[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap] |
| rs16826204 | 1.00[EUR][1000 genomes] |
| rs58212950 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60186429 | 0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6434105 | 0.90[AFR][1000 genomes] |
| rs6434106 | 0.88[AFR][1000 genomes] |
| rs6720759 | 1.00[YRI][hapmap] |
| rs6759569 | 0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6760373 | 1.00[YRI][hapmap] |
| rs7559451 | 0.95[AFR][1000 genomes] |
| rs7571112 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7578837 | 0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7599314 | 1.00[ASW][hapmap];0.92[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes] |
| rs7600401 | 1.00[YRI][hapmap] |
| rs7603421 | 0.90[ASW][hapmap];0.89[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532412 | chr2:185347334-186108701 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv834484 | chr2:185550006-185762728 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
