Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10427295	0.81[ASW][hapmap];0.89[LWK][hapmap]
rs10931153	0.84[YRI][hapmap]
rs11887199	0.87[YRI][hapmap]
rs11892202	0.88[YRI][hapmap]
rs11892276	0.88[YRI][hapmap]
rs11896205	0.87[AMR][1000 genomes]
rs11896874	0.81[YRI][hapmap]
rs11899942	0.89[MKK][hapmap]
rs11902536	0.88[YRI][hapmap]
rs1599875	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap]
rs58212950	0.95[AFR][1000 genomes]
rs60186429	0.87[AFR][1000 genomes]
rs6434105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6434106	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6720759	0.88[YRI][hapmap]
rs6759569	0.87[AFR][1000 genomes]
rs6760373	0.84[YRI][hapmap]
rs7559451	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7577657	1.00[ASW][hapmap];0.92[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap]
rs7578837	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7600401	0.88[YRI][hapmap]
rs7603421	0.90[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv508189	chr2:185695276-185701287	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185697200-185699400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr2:185697200-185699800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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