Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10427295	0.90[ASW][hapmap];0.92[LWK][hapmap];0.87[AFR][1000 genomes]
rs10803979	0.87[AFR][1000 genomes]
rs10931153	0.84[YRI][hapmap]
rs11887199	0.87[YRI][hapmap]
rs11892202	0.87[YRI][hapmap]
rs11892276	0.88[YRI][hapmap]
rs11896205	0.89[AFR][1000 genomes]
rs11896874	0.86[YRI][hapmap]
rs11899942	0.89[MKK][hapmap]
rs11902536	0.88[YRI][hapmap]
rs1599875	0.90[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap]
rs60186429	0.83[AFR][1000 genomes]
rs6434105	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6434106	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6720759	0.88[YRI][hapmap]
rs6759569	0.83[AFR][1000 genomes]
rs6760373	0.88[YRI][hapmap]
rs72893092	0.85[AFR][1000 genomes]
rs72893100	0.82[AFR][1000 genomes]
rs7559451	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7571112	0.88[AFR][1000 genomes]
rs7577657	0.90[ASW][hapmap];0.89[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap]
rs7599314	0.90[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7600401	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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