Variant report

Variant	rs11892202
Chromosome Location	chr2:185738998-185738999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10931153	0.96[YRI][hapmap]
rs11887199	1.00[YRI][hapmap]
rs11892276	1.00[YRI][hapmap]
rs11896874	1.00[YRI][hapmap]
rs11902536	1.00[YRI][hapmap]
rs1599875	1.00[YRI][hapmap]
rs58212950	0.88[AFR][1000 genomes]
rs60186429	0.94[AFR][1000 genomes]
rs6434105	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6434106	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6720759	1.00[YRI][hapmap]
rs6759569	0.94[AFR][1000 genomes]
rs6760373	1.00[YRI][hapmap]
rs7559451	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7577657	1.00[YRI][hapmap]
rs7578837	0.88[YRI][hapmap];0.88[AFR][1000 genomes]
rs7599314	0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7600401	1.00[YRI][hapmap]
rs7603421	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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