Variant report

Variant	rs6746923
Chromosome Location	chr2:113553426-113553427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113520231..113523321-chr2:113551800..113554508,3	K562	blood:
2	chr2:113551891..113553444-chr2:113640902..113642411,2	K562	blood:

Variant related genes	Relation type
ENSG00000169607	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10169524	0.93[ASN][1000 genomes]
rs10187872	0.84[CHB][hapmap];0.84[JPT][hapmap];0.84[MEX][hapmap]
rs10496444	0.81[CHB][hapmap]
rs10496445	0.81[CHB][hapmap]
rs11123148	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs12478842	0.81[CHB][hapmap]
rs12711741	0.81[CHB][hapmap]
rs13009294	0.81[CHB][hapmap]
rs13027814	0.81[CHB][hapmap]
rs1609682	0.81[CHB][hapmap]
rs17042407	0.86[ASN][1000 genomes]
rs17598291	0.85[CHD][hapmap]
rs2071373	0.81[CHB][hapmap]
rs2071374	0.94[ASN][1000 genomes]
rs2138606	0.81[MEX][hapmap]
rs2856838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3783515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3783516	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3783521	0.81[CHB][hapmap]
rs3783525	0.81[CHB][hapmap]
rs3783526	0.81[CHB][hapmap]
rs3783546	0.81[CHB][hapmap]
rs3783547	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3783550	0.81[CHB][hapmap]
rs4848301	0.81[CHB][hapmap]
rs4848302	0.81[CHB][hapmap]
rs4849123	0.85[CHD][hapmap]
rs62157427	0.86[ASN][1000 genomes]
rs62157428	0.86[ASN][1000 genomes]
rs62157429	0.86[ASN][1000 genomes]
rs62157430	0.86[ASN][1000 genomes]
rs62157431	0.86[ASN][1000 genomes]
rs6542095	0.81[CHB][hapmap]
rs6710316	0.81[ASN][1000 genomes]
rs6716046	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428724	chr2:113376894-113555421	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1010106	chr2:113394981-113556071	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113542400-113559200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:113543000-113562200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:113548000-113554800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:113548400-113553800	Enhancers	Placenta	Placenta
5	chr2:113548600-113554400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:113549200-113553800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr2:113549400-113555200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:113550400-113554400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr2:113550400-113554400	Enhancers	HMEC	breast
10	chr2:113550600-113553800	Enhancers	Fetal Lung	lung
11	chr2:113550600-113554400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:113550600-113554400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:113550800-113553800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr2:113550800-113554400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:113550800-113554400	Enhancers	Placenta Amnion	Placenta Amnion
16	chr2:113551600-113553800	Enhancers	Primary hematopoietic stem cells	blood
17	chr2:113551800-113553600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr2:113551800-113553800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr2:113552000-113553800	Enhancers	GM12878-XiMat	blood
20	chr2:113552400-113553600	Enhancers	Esophagus	oesophagus
21	chr2:113552400-113553800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr2:113552600-113553600	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr2:113552600-113553800	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr2:113552800-113553600	Enhancers	K562	blood
25	chr2:113552800-113553800	Enhancers	Hela-S3	cervix
26	chr2:113552800-113554600	Enhancers	NHEK	skin
27	chr2:113552800-113560800	Weak transcription	Osteobl	bone
28	chr2:113553200-113553600	Enhancers	H9 Cell Line	embryonic stem cell
29	chr2:113553200-113553600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr2:113553400-113553600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links