Variant report

Variant	rs62157427
Chromosome Location	chr2:113557631-113557632
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113554700..113558289-chr2:113562996..113565231,3	K562	blood:
2	chr2:113555926..113558593-chr2:113563370..113565916,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10169524	0.81[ASN][1000 genomes]
rs11680809	0.88[ASN][1000 genomes]
rs17042407	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17598291	0.99[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2071374	0.82[ASN][1000 genomes]
rs2856838	0.81[ASN][1000 genomes]
rs3783515	0.81[ASN][1000 genomes]
rs3783516	0.81[ASN][1000 genomes]
rs3783547	0.81[ASN][1000 genomes]
rs4849123	0.88[ASN][1000 genomes]
rs62157428	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62157429	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62157430	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62157431	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62157435	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6710316	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6716046	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6746923	0.86[ASN][1000 genomes]
rs7585707	0.88[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113542400-113559200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:113543000-113562200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:113552800-113560800	Weak transcription	Osteobl	bone
4	chr2:113553600-113559000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:113553600-113559000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:113553600-113561200	Weak transcription	K562	blood
7	chr2:113553600-113562800	Weak transcription	Esophagus	oesophagus
8	chr2:113553800-113558400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:113553800-113559200	Weak transcription	Hela-S3	cervix
10	chr2:113553800-113563000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:113554400-113558800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:113555600-113563200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:113555800-113557800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr2:113556000-113557800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr2:113556200-113557800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr2:113556200-113557800	Enhancers	Primary hematopoietic stem cells	blood
17	chr2:113556200-113558600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:113556600-113557800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr2:113557000-113558000	Enhancers	GM12878-XiMat	blood
20	chr2:113557400-113558800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr2:113557400-113559000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:113557400-113560600	Weak transcription	HMEC	breast
23	chr2:113557400-113560600	Weak transcription	NHEK	skin

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