Variant report

Variant	rs11680809
Chromosome Location	chr2:113570809-113570810
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113554665..113556955-chr2:113568287..113571042,2	K562	blood:
2	chr2:113570424..113572212-chr2:113575951..113578663,2	MCF-7	breast:
3	chr2:113569914..113572061-chr2:113574224..113576848,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17042407	0.88[ASN][1000 genomes]
rs17598291	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3783516	0.84[MEX][hapmap]
rs4849123	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs62157427	0.88[ASN][1000 genomes]
rs62157428	0.88[ASN][1000 genomes]
rs62157429	0.88[ASN][1000 genomes]
rs62157430	0.88[ASN][1000 genomes]
rs62157431	0.88[ASN][1000 genomes]
rs62157435	1.00[ASN][1000 genomes]
rs6710316	0.93[ASN][1000 genomes]
rs6716046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6746923	0.85[CHD][hapmap];0.84[MEX][hapmap]
rs7585707	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113566400-113572400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:113567400-113575800	Weak transcription	Brain Substantia Nigra	brain
3	chr2:113568400-113572200	Enhancers	HUVEC	blood vessel
4	chr2:113568400-113573000	Enhancers	HepG2	liver
5	chr2:113568600-113571600	Enhancers	NHEK	skin
6	chr2:113568600-113575000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:113568600-113575200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:113568800-113571000	Enhancers	Spleen	Spleen
9	chr2:113568800-113571000	Enhancers	NHLF	lung
10	chr2:113568800-113571800	Enhancers	Adipose Nuclei	Adipose
11	chr2:113568800-113572000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:113568800-113572200	Enhancers	HMEC	breast
13	chr2:113568800-113572400	Enhancers	NH-A	brain
14	chr2:113568800-113572400	Enhancers	NHDF-Ad	bronchial
15	chr2:113569000-113571000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr2:113569000-113571400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr2:113569000-113571800	Enhancers	Fetal Stomach	stomach
18	chr2:113569000-113572200	Enhancers	Fetal Muscle Leg	muscle
19	chr2:113569000-113572200	Enhancers	Placenta	Placenta
20	chr2:113569000-113572200	Enhancers	Osteobl	bone
21	chr2:113569000-113572400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:113569000-113572400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:113569000-113576000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:113569200-113571000	Enhancers	H9 Cell Line	embryonic stem cell
25	chr2:113569200-113571400	Enhancers	Stomach Smooth Muscle	stomach
26	chr2:113569200-113572400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr2:113569400-113571000	Enhancers	Primary T cells from cord blood	blood
28	chr2:113569400-113571200	Weak transcription	Pancreas	Pancrea
29	chr2:113569400-113571400	Weak transcription	Right Ventricle	heart
30	chr2:113569400-113571600	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr2:113569400-113571600	Weak transcription	Right Atrium	heart
32	chr2:113569400-113572000	Weak transcription	Psoas Muscle	Psoas
33	chr2:113569400-113572200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr2:113569400-113572400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr2:113569400-113576200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr2:113569600-113571200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr2:113569600-113574600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr2:113569800-113571200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr2:113569800-113571600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:113569800-113571600	Weak transcription	Fetal Thymus	thymus
41	chr2:113569800-113572000	Weak transcription	Gastric	stomach
42	chr2:113570000-113571400	Flanking Active TSS	K562	blood
43	chr2:113570000-113572400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr2:113570000-113572800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr2:113570200-113571200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr2:113570400-113571400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr2:113570400-113571400	Weak transcription	Hela-S3	cervix
48	chr2:113570400-113571600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr2:113570400-113571800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr2:113570400-113571800	Weak transcription	A549	lung

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