Variant report

Variant	rs6749018
Chromosome Location	chr2:101001859-101001860
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 149 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs10048665	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10170109	0.82[ASN][1000 genomes]
rs10174145	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10180423	0.82[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10182399	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10183150	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10186134	0.93[EUR][1000 genomes]
rs10193204	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10194210	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10195793	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10202326	0.89[EUR][1000 genomes]
rs1030901	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1030902	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11123824	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11123826	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11123827	0.86[EUR][1000 genomes]
rs1114595	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11674569	0.85[CEU][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11674830	0.91[EUR][1000 genomes]
rs11675901	0.88[EUR][1000 genomes]
rs11678148	0.83[CEU][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes]
rs11678158	0.88[EUR][1000 genomes]
rs11680660	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11682557	0.88[EUR][1000 genomes]
rs11682748	0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs11683088	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11684004	0.83[CEU][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes]
rs11684516	0.90[EUR][1000 genomes]
rs11685250	0.83[CEU][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes]
rs11685406	0.89[EUR][1000 genomes]
rs11686293	0.81[EUR][1000 genomes]
rs11686649	0.89[EUR][1000 genomes]
rs11686799	0.89[EUR][1000 genomes]
rs11686842	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes]
rs11686880	0.82[CEU][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes]
rs11687865	0.83[EUR][1000 genomes]
rs11688285	0.88[EUR][1000 genomes]
rs11689439	0.80[EUR][1000 genomes]
rs11691135	1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11691684	0.81[EUR][1000 genomes]
rs11693044	0.81[EUR][1000 genomes]
rs11693424	0.80[EUR][1000 genomes]
rs11693471	0.88[EUR][1000 genomes]
rs11694642	0.89[EUR][1000 genomes]
rs11694700	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11892034	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11895772	0.88[ASN][1000 genomes]
rs12373827	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs12615466	0.81[EUR][1000 genomes]
rs12617779	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12618908	0.88[EUR][1000 genomes]
rs12621892	0.88[EUR][1000 genomes]
rs12622318	0.81[EUR][1000 genomes]
rs12712075	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12989897	0.88[EUR][1000 genomes]
rs12991172	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12991577	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12997725	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12999151	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12999779	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13001423	0.80[EUR][1000 genomes]
rs13006224	0.80[EUR][1000 genomes]
rs13020451	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13021801	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13023534	0.80[EUR][1000 genomes]
rs13026570	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13031711	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13031906	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1437967	0.80[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1437969	0.96[EUR][1000 genomes]
rs1530028	0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs1530029	0.90[EUR][1000 genomes]
rs1530030	0.85[CEU][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1530031	0.89[CEU][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes]
rs1811415	0.91[EUR][1000 genomes]
rs1837143	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1967339	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1967341	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2099611	1.00[CEU][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes]
rs2164847	0.82[CEU][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes]
rs2241809	0.90[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes]
rs2241810	0.85[CEU][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2241811	1.00[CEU][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2309798	0.82[CEU][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes]
rs2309800	0.90[CEU][hapmap];0.89[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2309852	0.91[EUR][1000 genomes]
rs3748930	0.90[CEU][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3828193	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs4149505	0.91[EUR][1000 genomes]
rs4149507	0.83[CEU][hapmap];0.91[EUR][1000 genomes]
rs4149510	0.85[CEU][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes]
rs4149512	0.85[CEU][hapmap];0.84[JPT][hapmap];0.91[EUR][1000 genomes]
rs4149513	0.85[CEU][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes]
rs4149517	1.00[CEU][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes]
rs4149518	0.89[CEU][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4149523	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4264577	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4340543	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4378827	0.93[EUR][1000 genomes]
rs4387816	0.91[EUR][1000 genomes]
rs4407265	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4477940	0.89[EUR][1000 genomes]
rs4640404	0.96[EUR][1000 genomes]
rs4850927	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4850929	0.90[CEU][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4850930	0.90[CEU][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes]
rs4850931	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4851288	0.83[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4851292	0.81[EUR][1000 genomes]
rs4851293	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4851294	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4851297	0.86[EUR][1000 genomes]
rs4851298	0.88[EUR][1000 genomes]
rs4851302	0.88[EUR][1000 genomes]
rs4851303	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4851304	0.90[EUR][1000 genomes]
rs4851305	0.86[EUR][1000 genomes]
rs4851310	0.91[EUR][1000 genomes]
rs4851311	0.91[EUR][1000 genomes]
rs4851312	1.00[CEU][hapmap];0.89[JPT][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4851313	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs62148360	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6542940	0.94[EUR][1000 genomes]
rs6542942	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6542944	0.90[CEU][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6542947	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6716636	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6725052	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6731549	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6736311	0.89[EUR][1000 genomes]
rs6737217	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6754176	1.00[CEU][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6757754	0.89[EUR][1000 genomes]
rs74177694	0.89[EUR][1000 genomes]
rs74177695	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74177696	0.82[EUR][1000 genomes]
rs7425449	0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs7425797	0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs7585582	1.00[CEU][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7590388	0.87[EUR][1000 genomes]
rs7597615	0.83[CEU][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes]
rs893416	0.86[EUR][1000 genomes]
rs920270	0.82[ASN][1000 genomes]
rs930374	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9973536	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv874701	chr2:100976139-101023261	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100993200-101017800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:100996400-101007600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:100997800-101002800	Weak transcription	K562	blood
4	chr2:100997800-101008400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:100998200-101008400	Weak transcription	Dnd41	blood
6	chr2:100998200-101008800	Weak transcription	GM12878-XiMat	blood
7	chr2:100998200-101009000	Weak transcription	A549	lung
8	chr2:100998200-101022600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:100998400-101010000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr2:101000400-101009400	Weak transcription	HepG2	liver
11	chr2:101001400-101002400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:101001600-101005200	Weak transcription	Fetal Brain Female	brain
13	chr2:101001800-101002000	Enhancers	Gastric	stomach
14	chr2:101001800-101002000	Enhancers	Psoas Muscle	Psoas

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