Variant report

Variant	rs7585582
Chromosome Location	chr2:100998030-100998031
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:100993432..100995789-chr2:100996356..101000421,3	MCF-7	breast:
2	chr2:100938015..100940473-chr2:100996215..100998550,2	MCF-7	breast:
3	chr2:100876921..100878044-chr2:100997529..100998340,3	K562	blood:
4	chr2:100935841..100941857-chr2:100994239..100999137,10	MCF-7	breast:
5	chr2:100948566..100950699-chr2:100996503..100999305,2	MCF-7	breast:
6	chr2:100879014..100880290-chr2:100996973..100998375,14	MCF-7	breast:
7	chr2:100879002..100880063-chr2:100997058..100998343,16	K562	blood:
8	chr2:100879538..100882324-chr2:100997148..100999521,3	K562	blood:
9	chr2:100879047..100879970-chr2:100997375..100998193,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000170500	Chromatin interaction
ENSG00000270699	Chromatin interaction

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs10048665	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10174145	0.86[EUR][1000 genomes]
rs10180423	0.93[CHB][hapmap];0.81[EUR][1000 genomes]
rs10182399	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10183150	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10186134	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10193204	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10195793	0.81[ASN][1000 genomes]
rs10202326	0.87[EUR][1000 genomes]
rs1030901	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1030902	0.91[EUR][1000 genomes]
rs10460478	0.81[EUR][1000 genomes]
rs11123824	0.80[EUR][1000 genomes]
rs11123826	0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11123827	0.85[EUR][1000 genomes]
rs1114595	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674569	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs11674830	0.88[EUR][1000 genomes]
rs11675901	0.87[EUR][1000 genomes]
rs11678148	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs11678158	0.86[EUR][1000 genomes]
rs11680660	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11682557	0.86[EUR][1000 genomes]
rs11683088	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11683121	0.81[EUR][1000 genomes]
rs11684004	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs11684516	0.88[EUR][1000 genomes]
rs11685250	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs11685406	0.87[EUR][1000 genomes]
rs11686649	0.87[EUR][1000 genomes]
rs11686799	0.88[EUR][1000 genomes]
rs11686842	0.83[CEU][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes]
rs11686880	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs11687352	0.81[EUR][1000 genomes]
rs11687865	0.82[EUR][1000 genomes]
rs11688285	0.86[EUR][1000 genomes]
rs11691135	0.89[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11691684	0.83[EUR][1000 genomes]
rs11693471	0.86[EUR][1000 genomes]
rs11694642	0.88[EUR][1000 genomes]
rs11694700	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11892034	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12373827	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs12617779	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12618908	0.86[EUR][1000 genomes]
rs12621892	0.86[EUR][1000 genomes]
rs12989897	0.87[EUR][1000 genomes]
rs12991172	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12991577	0.90[EUR][1000 genomes]
rs12997725	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12999151	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12999779	0.80[EUR][1000 genomes]
rs13020451	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13021801	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13026570	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13031711	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13031906	0.87[EUR][1000 genomes]
rs1437967	0.92[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1437969	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1530029	0.89[EUR][1000 genomes]
rs1530030	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs1530031	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1811415	0.89[EUR][1000 genomes]
rs1837143	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866198	0.80[EUR][1000 genomes]
rs2099611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2164847	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs2241809	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs2241810	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs2241811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2309798	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs2309800	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2309852	0.90[EUR][1000 genomes]
rs3748930	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3828193	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs4149505	0.88[EUR][1000 genomes]
rs4149507	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs4149510	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs4149512	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs4149513	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs4149517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4149518	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs4149523	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4264577	0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4340543	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4378827	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4387816	0.90[EUR][1000 genomes]
rs4407265	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4477940	0.88[EUR][1000 genomes]
rs4635546	0.80[EUR][1000 genomes]
rs4640404	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4850927	0.81[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4850929	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4850930	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4850931	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4851288	0.93[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4851293	0.80[EUR][1000 genomes]
rs4851294	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4851297	0.85[EUR][1000 genomes]
rs4851298	0.87[EUR][1000 genomes]
rs4851302	0.87[EUR][1000 genomes]
rs4851303	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4851304	0.89[EUR][1000 genomes]
rs4851305	0.85[EUR][1000 genomes]
rs4851310	0.90[EUR][1000 genomes]
rs4851311	0.90[EUR][1000 genomes]
rs4851312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4851313	0.93[CEU][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62148360	0.91[EUR][1000 genomes]
rs6542940	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6542942	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6542944	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6542947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6716636	0.83[CEU][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6725052	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6731549	0.81[CEU][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6736311	0.87[EUR][1000 genomes]
rs6737217	0.91[EUR][1000 genomes]
rs6749018	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6754176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6757754	0.87[EUR][1000 genomes]
rs74177694	0.87[EUR][1000 genomes]
rs74177695	0.83[EUR][1000 genomes]
rs74177696	0.81[EUR][1000 genomes]
rs7590388	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7597615	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs893416	0.86[EUR][1000 genomes]
rs920269	0.80[EUR][1000 genomes]
rs920270	0.80[EUR][1000 genomes]
rs930374	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9973536	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv874701	chr2:100976139-101023261	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100993200-101017800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:100996400-101007600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:100997400-100998200	Enhancers	A549	lung
4	chr2:100997400-100998400	Enhancers	Primary B cells from peripheral blood	blood
5	chr2:100997600-100998200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:100997600-100998200	Enhancers	Dnd41	blood
7	chr2:100997600-100998200	Enhancers	GM12878-XiMat	blood
8	chr2:100997800-100998200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr2:100997800-101002800	Weak transcription	K562	blood
10	chr2:100997800-101008400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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