Variant report

Variant	rs67490848
Chromosome Location	chr1:213775583-213775584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11120166	0.82[ASN][1000 genomes]
rs12024015	0.81[ASN][1000 genomes]
rs12024904	0.82[ASN][1000 genomes]
rs12031624	0.81[ASN][1000 genomes]
rs12049107	0.81[ASN][1000 genomes]
rs12062055	0.82[ASN][1000 genomes]
rs12062324	0.82[ASN][1000 genomes]
rs12063434	0.82[ASN][1000 genomes]
rs12077375	0.82[ASN][1000 genomes]
rs12078742	0.82[ASN][1000 genomes]
rs12078860	0.82[ASN][1000 genomes]
rs17021041	0.82[ASN][1000 genomes]
rs17021061	0.82[ASN][1000 genomes]
rs4394615	0.81[ASN][1000 genomes]
rs56714901	0.82[ASN][1000 genomes]
rs58537941	0.81[ASN][1000 genomes]
rs60223676	0.82[ASN][1000 genomes]
rs61197031	0.82[ASN][1000 genomes]
rs61616602	0.81[ASN][1000 genomes]
rs6661042	0.82[ASN][1000 genomes]
rs6692095	0.88[AFR][1000 genomes]
rs72749621	0.82[ASN][1000 genomes]
rs73074523	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3345878	chr1:213714352-213841547	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426755	chr1:213714443-213841514	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3378592	chr1:213714463-213841484	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3368819	chr1:213774179-213776202	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213769000-213775800	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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