Variant report

Variant	rs12062055
Chromosome Location	chr1:213760243-213760244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11120166	1.00[ASN][1000 genomes]
rs12021535	0.91[ASN][1000 genomes]
rs12023183	0.91[ASN][1000 genomes]
rs12024015	0.93[ASN][1000 genomes]
rs12024904	1.00[ASN][1000 genomes]
rs12026459	0.91[ASN][1000 genomes]
rs12026491	0.91[ASN][1000 genomes]
rs12029072	0.85[ASN][1000 genomes]
rs12031624	0.93[ASN][1000 genomes]
rs12033788	0.91[ASN][1000 genomes]
rs12040529	0.85[ASN][1000 genomes]
rs12044623	0.85[ASN][1000 genomes]
rs12044697	0.85[ASN][1000 genomes]
rs12045032	0.85[ASN][1000 genomes]
rs12048306	0.89[ASN][1000 genomes]
rs12049107	0.93[ASN][1000 genomes]
rs12062324	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063434	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077375	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12078742	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12078860	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17021041	1.00[ASN][1000 genomes]
rs17021061	1.00[ASN][1000 genomes]
rs400857	1.00[JPT][hapmap]
rs412878	1.00[JPT][hapmap]
rs420627	1.00[JPT][hapmap]
rs436112	1.00[JPT][hapmap]
rs4394615	0.93[ASN][1000 genomes]
rs4475718	0.91[ASN][1000 genomes]
rs55816435	0.91[ASN][1000 genomes]
rs56254675	0.91[ASN][1000 genomes]
rs56352066	0.91[ASN][1000 genomes]
rs56714901	1.00[ASN][1000 genomes]
rs58537941	0.93[ASN][1000 genomes]
rs60223676	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61197031	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61616602	0.93[ASN][1000 genomes]
rs6661042	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67490848	0.82[ASN][1000 genomes]
rs72747785	0.85[ASN][1000 genomes]
rs72747794	0.85[ASN][1000 genomes]
rs72747798	0.85[ASN][1000 genomes]
rs72747801	0.85[ASN][1000 genomes]
rs72749621	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3345878	chr1:213714352-213841547	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426755	chr1:213714443-213841514	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3378592	chr1:213714463-213841484	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213758000-213760600	Enhancers	Fetal Intestine Large	intestine
2	chr1:213758200-213760400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr1:213758200-213760600	Enhancers	HepG2	liver
4	chr1:213758200-213760800	Enhancers	Pancreas	Pancrea
5	chr1:213758600-213760400	Enhancers	Fetal Heart	heart
6	chr1:213759200-213760600	Enhancers	Duodenum Mucosa	Duodenum
7	chr1:213759200-213760600	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr1:213760200-213760400	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links