Variant report

Variant	rs400857
Chromosome Location	chr1:213729717-213729718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:213729520..213732362-chr1:213732486..213735394,2	K562	blood:
2	chr1:213729027..213731700-chr1:214452978..214455881,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143499	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10864052	0.94[EUR][1000 genomes]
rs12021535	0.85[ASN][1000 genomes]
rs12023183	0.85[ASN][1000 genomes]
rs12024015	0.83[ASN][1000 genomes]
rs12026459	0.85[ASN][1000 genomes]
rs12026491	0.85[ASN][1000 genomes]
rs12029072	0.83[ASN][1000 genomes]
rs12029131	0.91[EUR][1000 genomes]
rs12031624	0.83[ASN][1000 genomes]
rs12033788	0.85[ASN][1000 genomes]
rs12040529	0.83[ASN][1000 genomes]
rs12044623	0.83[ASN][1000 genomes]
rs12044697	0.83[ASN][1000 genomes]
rs12045032	0.83[ASN][1000 genomes]
rs12048306	0.83[ASN][1000 genomes]
rs12049107	0.83[ASN][1000 genomes]
rs1371291	0.94[EUR][1000 genomes]
rs2218115	0.93[EUR][1000 genomes]
rs320391	0.95[EUR][1000 genomes]
rs320392	0.95[EUR][1000 genomes]
rs4072954	0.94[EUR][1000 genomes]
rs410108	0.82[YRI][hapmap]
rs412878	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs420627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4297263	0.93[EUR][1000 genomes]
rs436112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4394615	0.83[ASN][1000 genomes]
rs4475718	0.85[ASN][1000 genomes]
rs4655298	0.94[EUR][1000 genomes]
rs4655299	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55816435	0.85[ASN][1000 genomes]
rs56254675	0.85[ASN][1000 genomes]
rs56352066	0.85[ASN][1000 genomes]
rs58537941	0.83[ASN][1000 genomes]
rs61616602	0.83[ASN][1000 genomes]
rs6540792	0.93[EUR][1000 genomes]
rs72747785	0.83[ASN][1000 genomes]
rs72747794	0.83[ASN][1000 genomes]
rs72747798	0.83[ASN][1000 genomes]
rs72747801	0.83[ASN][1000 genomes]
rs72749621	0.81[ASN][1000 genomes]
rs7545069	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3345878	chr1:213714352-213841547	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426755	chr1:213714443-213841514	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3378592	chr1:213714463-213841484	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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