Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10494961	0.87[ASN][1000 genomes]
rs10864052	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12029131	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12044357	0.87[ASN][1000 genomes]
rs12044414	0.87[ASN][1000 genomes]
rs12063736	0.89[ASN][1000 genomes]
rs1371291	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17020995	0.81[JPT][hapmap]
rs2218115	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs320391	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs320392	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35382150	0.89[ASN][1000 genomes]
rs400857	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs412878	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs420627	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4297263	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs436112	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4561009	0.81[ASN][1000 genomes]
rs4655298	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4655299	0.96[EUR][1000 genomes]
rs6540792	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7545069	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3345878	chr1:213714352-213841547	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426755	chr1:213714443-213841514	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3378592	chr1:213714463-213841484	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213732800-213744200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:213738200-213743000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr1:213741000-213748200	Enhancers	HepG2	liver
4	chr1:213741400-213744200	Enhancers	Fetal Intestine Small	intestine
5	chr1:213742000-213743400	Enhancers	Fetal Intestine Large	intestine
6	chr1:213742200-213746000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:213742400-213743600	Enhancers	Duodenum Mucosa	Duodenum
8	chr1:213742600-213746400	Weak transcription	Pancreas	Pancrea

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