Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10494961	0.94[ASN][1000 genomes]
rs10864052	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12029131	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12044357	0.94[ASN][1000 genomes]
rs12044414	0.94[ASN][1000 genomes]
rs12063736	0.93[ASN][1000 genomes]
rs1371291	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17020995	0.84[JPT][hapmap]
rs2218115	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs320391	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs320392	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35382150	0.93[ASN][1000 genomes]
rs400857	1.00[CEU][hapmap];0.93[GIH][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs4072954	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs412878	1.00[CEU][hapmap];0.93[GIH][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs420627	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs436112	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4561009	0.88[ASN][1000 genomes]
rs4655298	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655299	0.94[EUR][1000 genomes]
rs4655301	0.82[ASN][1000 genomes]
rs6540792	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7545069	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3345878	chr1:213714352-213841547	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426755	chr1:213714443-213841514	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3378592	chr1:213714463-213841484	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4297263	NCRNA00161	trans	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213741000-213748200	Enhancers	HepG2	liver
2	chr1:213743600-213746800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr1:213744200-213747200	Weak transcription	Small Intestine	intestine
4	chr1:213744600-213748400	Enhancers	Fetal Intestine Large	intestine
5	chr1:213745400-213748200	Enhancers	Fetal Intestine Small	intestine
6	chr1:213746000-213747200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr1:213746000-213747200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr1:213746000-213747400	Enhancers	Brain Germinal Matrix	brain
9	chr1:213746200-213747400	Enhancers	Fetal Lung	lung
10	chr1:213746400-213747000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:213746400-213747200	Enhancers	Brain Cingulate Gyrus	brain
12	chr1:213746400-213747400	Enhancers	Brain Substantia Nigra	brain
13	chr1:213746400-213747600	Enhancers	Pancreas	Pancrea
14	chr1:213746600-213747000	Enhancers	Adipose Nuclei	Adipose
15	chr1:213746600-213747200	Enhancers	Brain Anterior Caudate	brain
16	chr1:213746600-213747400	Enhancers	Brain Angular Gyrus	brain

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