Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10494961	0.80[ASN][1000 genomes]
rs10864052	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12029131	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12044357	0.80[ASN][1000 genomes]
rs12044414	0.80[ASN][1000 genomes]
rs1371291	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2218115	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs320391	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs320392	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs400857	0.96[EUR][1000 genomes]
rs4072954	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs412878	0.96[EUR][1000 genomes]
rs420627	0.96[EUR][1000 genomes]
rs4297263	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs436112	0.96[EUR][1000 genomes]
rs4561009	0.98[ASN][1000 genomes]
rs4655298	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4655299	0.96[EUR][1000 genomes]
rs4655301	0.94[ASN][1000 genomes]
rs6540792	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3345878	chr1:213714352-213841547	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426755	chr1:213714443-213841514	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3378592	chr1:213714463-213841484	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213747400-213758400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr1:213755000-213758200	Weak transcription	Pancreas	Pancrea
3	chr1:213756200-213757000	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr1:213756200-213757000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr1:213756400-213757000	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr1:213756600-213758200	Weak transcription	HepG2	liver

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