Variant report

Variant	rs674953
Chromosome Location	chr15:45936932-45936933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr15:45936638-45936973	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr15:45936703-45936980	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr15:45936701-45936940	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:45936300..45938060-chr15:45941234..45942847,2	MCF-7	breast:
2	chr15:45931549..45933106-chr15:45935286..45937099,2	K562	blood:
3	chr15:45931689..45934379-chr15:45936432..45937938,2	MCF-7	breast:

Variant related genes	Relation type
SQRDL	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2028590	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2083728	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs636910	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8023730	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8023759	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv904190	chr15:45892672-45960897	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	27 gene(s)	inside rSNPs	n/a
4	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv526945	chr15:45935755-45941689	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45929000-45939000	Enhancers	Stomach Mucosa	stomach
2	chr15:45930000-45937800	Weak transcription	Right Ventricle	heart
3	chr15:45930400-45940800	Weak transcription	Fetal Thymus	thymus
4	chr15:45930600-45940800	Weak transcription	Thymus	Thymus
5	chr15:45931000-45938800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr15:45933800-45951200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:45934200-45937200	Enhancers	Lung	lung
8	chr15:45934200-45938600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:45934200-45961600	Weak transcription	Fetal Kidney	kidney
10	chr15:45934400-45938800	Enhancers	NHLF	lung
11	chr15:45934600-45937000	Weak transcription	Placenta	Placenta
12	chr15:45934600-45937400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:45934600-45937400	Enhancers	A549	lung
14	chr15:45934600-45937600	Weak transcription	Ovary	ovary
15	chr15:45934800-45937000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr15:45934800-45937000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:45934800-45937000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:45934800-45937800	Weak transcription	Brain Hippocampus Middle	brain
19	chr15:45934800-45937800	Weak transcription	Gastric	stomach
20	chr15:45934800-45937800	Weak transcription	Left Ventricle	heart
21	chr15:45934800-45945800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr15:45935000-45937000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:45935000-45937000	Weak transcription	Adipose Nuclei	Adipose
24	chr15:45935000-45937200	Weak transcription	Fetal Stomach	stomach
25	chr15:45935000-45937400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:45935000-45937600	Weak transcription	Aorta	Aorta
27	chr15:45935000-45937600	Weak transcription	HSMMtube	muscle
28	chr15:45935000-45937600	Weak transcription	NH-A	brain
29	chr15:45935200-45937000	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr15:45935200-45937000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr15:45935200-45937200	Weak transcription	HSMM	muscle
32	chr15:45935200-45937400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:45935400-45937000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:45935400-45937000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:45935400-45937600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr15:45935400-45937600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr15:45935800-45939000	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr15:45936000-45937000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:45936400-45937000	Weak transcription	Primary B cells from cord blood	blood
40	chr15:45936400-45938600	Enhancers	Esophagus	oesophagus
41	chr15:45936400-45938600	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr15:45936400-45939000	Enhancers	HMEC	breast
43	chr15:45936600-45937200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:45936600-45937200	Enhancers	Primary B cells from peripheral blood	blood
45	chr15:45936600-45938000	Enhancers	Primary T cells from cord blood	blood
46	chr15:45936600-45938000	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr15:45936600-45938200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:45936600-45938200	Enhancers	Liver	Liver
49	chr15:45936600-45938600	Enhancers	Primary T cells fromperipheralblood	blood
50	chr15:45936600-45938600	Enhancers	Pancreas	Pancrea

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