Variant report

Variant	rs6749757
Chromosome Location	chr2:100730111-100730112
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100729149..100730802-chr2:100730864..100732886,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10209110	0.83[EUR][1000 genomes]
rs10211595	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1062143	0.80[EUR][1000 genomes]
rs11123811	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs11694875	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11885529	0.86[EUR][1000 genomes]
rs12712065	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs1561230	0.86[EUR][1000 genomes]
rs2576678	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6714788	0.85[EUR][1000 genomes]
rs6733895	0.80[EUR][1000 genomes]
rs7565967	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7582731	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv458707	chr2:100687778-100753490	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv582529	chr2:100687778-100753490	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6749757	DUSP2	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100726800-100730400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:100727200-100730600	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr2:100727600-100730600	Enhancers	Primary T cells from cord blood	blood
4	chr2:100728600-100731800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr2:100728800-100732000	Enhancers	Fetal Thymus	thymus
6	chr2:100729200-100731800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr2:100729400-100730200	Genic enhancers	Dnd41	blood
8	chr2:100729400-100731800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr2:100729400-100732000	Enhancers	Thymus	Thymus
10	chr2:100729600-100731400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr2:100729600-100731800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr2:100729600-100731800	Enhancers	GM12878-XiMat	blood
13	chr2:100729600-100732000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr2:100729800-100730200	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
15	chr2:100729800-100730200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:100729800-100732000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr2:100730000-100730200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr2:100730000-100730400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr2:100730000-100730400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr2:100730000-100730800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr2:100730000-100730800	Enhancers	Spleen	Spleen
22	chr2:100730000-100731400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr2:100730000-100731800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr2:100730000-100731800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr2:100730000-100732000	Enhancers	Monocytes-CD14+_RO01746	blood

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